I am working with 16 copies of a module in a parent schematic, and connected the output pins of each to a different flag ("IN-1", "IN-2" etc.). After updating all the modules, many of these nets between the module pins and their individually named flags have associated with one another, and I'm getting "Net has multiple names" errors out the wazoo. Deleting and replacing all the wires doesn't fix the problem, but deleting certain ones and leaving them deleted sometimes unpredictably does.
I can't manually rename any of the nets by double clicking on them, either, as the field is always grayed out.
I'm quite baffled and starting to get frustrated, as I can't move forward if the PCB editor wants me to connect all these parts of the circuit that need to be separate.
(Two other recent problems worth mentioning: when I updated all the modules, I couldn't do it all at once. I could group select/double-click/"Update" groups of 8, or sometimes 4 or 2, but had to do many individually. Then after each update, the refdes was removed for each module, leaving them all with "??A" for names. I can't figure out how to fix this either.)
The document is private but I can make it public if any of you need to see it.