I was going crazy trying to work with mis-aligned pins and wires in the schematic view for Eagle imports. I finally created a script to align everything to the grid so it can be edited properly. Here are the steps:
Export the design in Upverter Open JSON format (thanks Upverter for providing this!)
Upload to my script here: http://upverter-fix.view.tl/
Create a new project using the newly generated .upv file
All the components and wires will now be aligned to the grid so they can be properly edited.
Note: the file is deleted from the server immediately after processing, so your design is not at risk (unless my server gets compromised or something...no guarantees here but I do my best!)
Prefer to do it locally? Here's the code: https://gist.github.com/elijahparker/ec156cba31e40ddccb37